ONTOLOGICAL CLARITY

A cinematic journey from asking "What is entropy?" at UCLA to discovering that information theory is primary, thermodynamics is derivative — and how this insight went from educational research to a NASDAQ IPO to saving lives with AI.

Begin the Journey →

Act 1: The Foundations — UCLA Undergrad (Mid-Late 1980s)

The Geography of Knowledge

UCLA. Double major: molecular biology and political science. First in family to go to college. Didn't go to the best high school. Everything so new. Brain desperately trying to fit the epistemology of Western civilization and science into a coherent puzzle.

South Campus: STEM people, pre-med, the "real" scientists. Stoichiometry was the killing field for budding scientists. If you didn't pass, you weren't STEM.

North Campus: Philosophy, political science — where the "exiled" went.

My Life: Running sprints between North and South Campus. Living a dual life. Always avoiding the question of disloyalty to my motherland.

Reading Plato and Aristotle. These dudes with one name — Plato, Aristotle. Trying to figure out how philosophy books from North Campus fit with equations from South Campus.

The Thermodynamics Revelation

Tied for Worst Class: Thermodynamics. Expected total focus on T in PV=nRT from stoichiometry class.

The Problem: Professor just started writing equations. Watched wondering: Why do I have to learn this? I don't even know what we're talking about. Can someone explain how this is supposed to fit in my head? Since that process is painful, I need to make a space for it, or I might as well read one of these philosophy books.

The Breaking Point: End of first class. Incredibly frustrated. All questions were math questions.

I stood out like a sore thumb. Asked the professor: "What is entropy in layman's terms?"

A Frozen Quiet Stopped the Room.

The professor looked uncomfortable. His math convolutions did not want to give up driving the steering wheel to the weakling on the right side who had to ask. Distant neurons — could they give some symbolic language of anything it could grab and use?

The Professor Said: "Mmmmmm..." Looked up. Almost pausing into group discomfort. "Randomness... yes, randomness."

Not Told:

  • That the 2nd law of thermodynamics tells us our universe tends to disorder, lower energy
  • That's why we age
  • That's why it takes 10 times more work to clean our dorm than to mess it up
  • That's why learning something without context is so painful

The Information Theory Epiphany

Little Did I Know: I was to use a theory I had come to believe just by keeping up with science in general: Everywhere we look, we run into observer/information issues.

The Clues Building:

  • Collapse of wave function
  • Schrödinger's cat (learned about next quarter)
  • Quantum entanglement — seems to propagate something faster than speed of light, but information can't be propagated
  • Sir Roger Penrose works with neuro researcher and comes up with theory of collapsing wave function and microtubules = consciousness (or some part)
  • Rumblings of a computational universe point to weird clues
  • Controversial and unconventional figures alike:
    • Steven Wolfram: referring to smallest unit of universe as "hypergraph element"
    • Renowned thinkers Vlatko Vedral, John Baez: refer to same as "quantum bits of space," "simplices"

All These Clues: Would lead me to a fateful entanglement with my earlier self.

The Breakthrough Understanding: Entropy makes sense because it is consistent with our world experience. BUT examined in terms of ontology, information theory's deductions just felt like they explained thermodynamics. After some quick research, a beautiful model unfolded.

The Immunology Confusion

Concepts in Immunology: That confusing mix of innate immunity and the wild monoclonal theory where antibodies are supposedly created for every possible invader. Somehow that was done all the time and worked. And that was supposed to explain everything.

Dropped the class first time. Had to retake it as my final class at UCLA.

The Question Forming: How does this fit together? What's the ontology?

Act 2: The Seeds Mature — Cornell (Late 1980s)

Opening Scene

Cornell University, studying Sovietology and geopolitics. Career goal: State Department or CIA. CIA application literally in hand.

The Twist: Two months later, the Berlin Wall falls. Everything changes.

The Philosophy of Science Class

Required to take Philosophy of Science. Initial reaction: "waste of time, I know it all."

But Now — With UCLA Background: Having struggled through thermodynamics, having run between North and South Campus, having tried to fit Plato and Aristotle with PV=nRT, this class suddenly has different resonance.

Learns About:

  • Paradigms and theories
  • Epistemology
  • Ontological clarity
  • Lakatosian paradigm shifts

The Pieces Start Connecting: Information theory might explain thermodynamics. Ontology matters for understanding. Paradigms structure how we think. That uncomfortable thermodynamics professor couldn't explain entropy in plain language because he didn't have ontological clarity.

Still Dismissive: Didn't fully understand why this mattered. Yet.

Act 3: Proving Ground — The TIMSS Project (UCLA, 1996)

Back at UCLA

Now understanding ontology matters.

The Audacious Bid: Professor Jim Stigler, UCLA psychology professor, wins $5M grant to analyze the nation's obsession: The Math Gap. Why is US education falling behind, particularly compared to Asian countries — Taiwan, Hong Kong, Singapore?

The Revolutionary Approach

Old way: VCR tapes, hoards of grad students watching hours of video, looking at pre-created code cards, using clunky tools to track SMPTE time codes

New way: Adopt absolutely brand new tech — digital video MPEG-1

The Vision: Create software from the ground up using QuickTime:

  • Embedded tool that automatically creates database of interesting time points
  • Multi-user system allowing real-time understanding of codes
  • Studies created from atomic units (teachers, students, questions, answers) rather than fully flushed out compound variables

The Challenge: Asked to create the system. In 1996, it needed to be instant — essentially the performance of a similar system now in 2025.

The Bleeding Edge: MPEG was so new that encoders had to be purchased from custom jobs — literally home-based startups in Silicon Valley. Went to personally pick up encoders literally from a garage full of wires and soldering irons.

The Key Innovation That Made the System Magic

Breaking the problem of retrieval of complex queries into first principles logic: set theory — Union, Intersection, Difference.

The Connection: This is exactly what information theory teaches. Breaking things down to atomic units. Just like thermodynamics can be explained through information theory.

Since set operations were lightning fast even in 1996, the system flew.

The Insight: Explicit ontologic understanding is powerful. So powerful that social sciences — which lack the ability to create experiments and controls — can control one thing: absolute clarity of thinking.

The Vindication

TIMSS project software (underlying tech) ended up being used by:

  • MacArthur Award winner Eleanor Ochs — spanning Linguistics/Anthropology/Biology
  • Shoa (Spielberg) Foundation's digital library's beginning — creating searchable multimedia database of the Holocaust

The Big Win: Co-founded Digital Lava (DGV) — spinoff of the technology. Took it to NASDAQ in the year 2000.

The Lesson Learned: Ontological clarity works. Information theory as organizing principle works. Breaking problems into atomic units with clear set operations creates magic. Had proof it worked at scale. NASDAQ-level proof.

Act 4: The Heartbreak — Biotech Era (Early 2000s)

Setting

Working in biotech, bioinformatics/computational biology. Team tasked with identifying targets for stroke drug.

Armed with Proof: Had just proven that ontological clarity creates breakthrough results at the highest level:

  • TIMSS was a success
  • Technology used by MacArthur winners
  • Technology used by Spielberg Foundation
  • Co-founded a company that went to NASDAQ
  • All based on first principles: information theory, ontological clarity, atomic units

The Question

Asked the scientists: "What is your operant model of stroke?" Thought if we could map the intersection of their conceptions, could target in silico work effectively. Had literally just done this successfully — from educational research all the way to a NASDAQ IPO.

Meeting after meeting: Silence. Sensed disregard for such an "irrelevant question."

The Proposal

Suggested Danger Theory (created by Polly Matzinger — the misfit stripper-turned-scientist who famously added her dog as co-author, pissing off the scientific establishment).

The Response: "Never heard of it."

That's when my science heart broke and I mentally checked out.

The Full Circle of Irony

  • UCLA thermodynamics professor couldn't explain entropy in plain language
  • Struggled between North and South Campus trying to understand ontology
  • Discovered information theory might explain thermodynamics
  • Proved the approach with TIMSS and NASDAQ company
  • Now biotech scientists can't explain their own operant model

The Bitter Irony: Had co-founded a NASDAQ company based on ontological clarity. Still couldn't get biomedical scientists to take the approach seriously. Just like that thermodynamics professor — they could do the math but couldn't explain the ontology.

Couldn't conceive of spending 60-hour weeks not being ontologically grounded and clear. Not after proving it worked at the highest levels.

Act 5: The Sabbatical — 15 Years in Photography (San Francisco)

The Escape

Frustrated with science, returned to childhood hobby: photography. Became professional photographer for 15 years. A "sabbatical" from the ontological chaos.

The Specialty: San Francisco City Hall weddings. Small, intimate elopement-style ceremonies.

The Clientele: A very particular profile:

  • Startup founders
  • Tech academicians
  • Venture capitalists

The Ironic Position: Had co-founded a NASDAQ company. Now photographing the next generation of people trying to do the same thing.

The Conversations

During shoots, talked with clients and picked their brains. One hobby: asking biomedical-related people about Danger Theory.

The Pulse Check: Got a real-time pulse on the industry over 15 years. Asked perhaps 100+ medical professionals and academics since 2008.

The Depressing Pattern: Not one person could articulate anything beyond "Inflammation," "Reaction to danger," "Reaction to damage." That's about it.

The Remarkable Observation

Some of the smartest leaders at all levels in biomedicine could not articulate their ontology. The foundation of their field. The framework they operated within. Just... vague concepts.

Déjà Vu: Just like that thermodynamics professor saying "randomness" without context. Just like the biotech scientists who couldn't articulate their stroke model.

The Contrast

  • UCLA 1980s: Struggled to understand thermodynamics because professor couldn't explain ontology
  • 1996: Helped social scientists achieve absolute clarity and create breakthrough tools
  • 2000: Co-founded NASDAQ company based on that clarity
  • 2008-2023: Watching biomedical scientists — with vastly more funding and resources — fumble with basic ontological questions

The Irony: AI started taking over photography. Of all things.

The Turning Point

Photographed a wedding for Aravind Srinivas, the founder of Perplexity. During the shoot, he told me about Perplexity and gave me the app.

The Realization: Had to leave photography. AI wasn't just coming — it was here, and the person revolutionizing search was standing in front of my camera. Jumped into AI headfirst. "Take no prisoners mode" — had a lot to catch up on.

Act 6: The AI Failures — Computational Immunology Startup

The Return

Working in startup on computational immunology. First efforts using AI.

The Grind: Coding almost 24/7 for a year.

Massive failure

AI had nasty habits:

  • Mock data everywhere
  • Not following guardrails
  • Reverting to tech stacks they were trained on

The Realization: "The only way to use AI is to create a full model that is mathematically sound and represents the best research of the particular paradigm at hand."

Back to First Principles

  • Information theory (from UCLA thermodynamics epiphany)
  • TIMSS principles — atomic units, clear set operations, explicit ontological framework
  • The same principles that went to NASDAQ

The Discovery: Didn't realize how messy the ontology of different fields actually are. Even messier than expected. Just like that thermodynamics professor — people using concepts they can't explain.

Act 7: Personal Crisis Becomes Catalyst — Rural Oregon (Recent)

The Tragedy

Partner develops crippling joint pain and autoimmune-like symptoms. Walking on an incline hurts.

Doctor's Response: "Walk on flat surfaces and take Celebrex."

Thoroughly pissed off: Invoked "kraken ADHD mode."

The Setting

Small town in central Oregon where nurse practitioners are essentially primary providers. Found one who was just as stubbornly focused on figuring this out.

Fighting the AIs Again: Brought in the big guns — panel of experts and judge models. Started pulling papers, parsing research.

The Archimedean Moment (shower version)

"I need to model and store all her labs and symptoms for dual use": 1) Reports for medical providers and specialists, 2) Symptoms translated to clinical terms of art

The Breakthrough

The database was created to present context to AIs, BUT equally (if not more) importantly — had to create ontologically clear model(s) to:

  • Analyze symptoms
  • Track reactions to myriad of meds tried and abandoned
  • Make sense of the complexity

Full Circle

  • Back to UCLA thermodynamics — information theory explains thermodynamics
  • Back to TIMSS 1996 — atomic units, set operations, clear ontology
  • Back to Digital Lava — proven at NASDAQ level
  • This time: symptoms, labs, medications, reactions as atomic units
  • Union, intersection, difference to find patterns

The Memory Returns: Back to that thermodynamics professor who couldn't explain entropy. Back to that philosophy class. Back to TIMSS project. Back to co-founding Digital Lava. Back to that biotech job. All of it suddenly makes sense.

Act 8: The Information Theory Ontology Engine Breakthrough (2024-2025)

The Fateful Entanglement With My Earlier Self

Changed My Ontology Engine: After some quick research from UCLA days, a beautiful model unfolded.

Created Framework: Structure and function-based immune system:

  • 4 layers encompassing a computational engine
  • BIOS (Basic Input/Output System)
  • OS (Operating System)
  • App/Memory Layer

Made It Behave In Terms Of Information Theory

The Breakthrough — Information theory is PRIMARY. Thermodynamics is DERIVATIVE.

  • Energy expenditure is derivative of information processing requirements
  • Entropy makes sense because information theory explains it
  • The immune system can be modeled as an information processing system
  • All those clues from UCLA: wave function collapse, quantum bits of space, hypergraph elements — all pointing to information as fundamental

The Ontologically Flushed Out Testable Hypotheses Were A Sight To Behold:

Built using first principles:

  • Atomic units (just like TIMSS)
  • Set operations (union, intersection, difference)
  • Clear ontological framework (information theory primary, thermodynamics derivative)
  • Mathematical soundness

Act 9: Vindication and Fury — The Medical Breakthrough

The Symptom Tracker and Etiology Engine

Built using information theory principles — provided argumentation backed by science to get:

  • Referrals for labs — almost 100 tests in a month
  • Imaging
  • The love of my life was on a fast path to rapid diagnosis

The Impossible Becomes Possible

Rheumatology referral (notoriously difficult to get in rural Oregon) and much-improved medical support.

In Silico Success: Have a diagnosis. Have more processed, detailed justifications for immediate use of biologicals.

The Results: Medical system finally mobilized. Partner getting proper care.

Then... Internal Fury

The Vindication: Danger Theory is now accepted as a critical component of the immune system. It's mainstream. It's taught. It's fundamental.

The Disrespect: After asking perhaps 100+ medical professionals and academics since 2008 — from 2008 to 2025 — not ONE remembered that name or could articulate the formal understanding of the ontology.

The Realization: "I was right all along."

The Full Circle

  • UCLA 1980s: Thermodynamics professor couldn't explain entropy — "randomness"
  • Discovered information theory might explain thermodynamics fundamentally
  • 1996: Proven it works with TIMSS
  • 2000: Co-founded a NASDAQ company based on these principles
  • Early 2000s: Biotech scientists couldn't explain their operant model — dismissed despite NASDAQ track record
  • 2008-2023: Watched 100+ brilliant people unable to articulate their ontological frameworks
  • 2025: Information theory framework saves partner's life

The Pattern Holds: They use the ideas (inflammation, danger signals, damage response, entropy, randomness) but can't name the framework. Can't articulate the paradigm. Don't understand their own ontological foundations.

The Broader Implication

If the people making life-and-death decisions can't articulate the theoretical framework they're operating within... what does that mean for science? For medicine? For AI?

Act 10: The Ontology Engine (2025)

Current Day

Running AI startup, working on business automation tools.

The Fear: Anything being built could become an agent employed by larger entities at lower cost. Commodification looming.

Then This Happened

Little by little, built an ontology engine from components already created:

  • Semantically understand iMessages
  • Fluidly create knowledge graphs from documents
  • Combine ideas with set operations (just like TIMSS! Just like Digital Lava!)
  • Efficiently store ideas, thoughts, concepts as atomic units
  • All based on information theory as primary, thermodynamics as derivative

The Layers

Started remembering the philosophy class in layers as encountered paradigms, theories, schools of thought.

Magic Happens: Once ontology engine was employed — Could fluidly change schools of thought. Delve into different papers. Pull out what worked and what didn't. Navigate competing frameworks with clarity. Model immune system with information theory as organizing principle. Save my partner's health and quality of life.

The Full Circle

  • UCLA 1980s: Asked "What is entropy?" — discovered information theory connection
  • 1989: Philosophy of science class — learned about ontological clarity
  • 1996: Proved it works (TIMSS)
  • 2000: Co-founded NASDAQ company (Digital Lava) based on information theory principles
  • Early 2000s: Rejected when trying to apply it (biotech) — despite NASDAQ track record
  • 2008-2023: Watched field fail at it (photography sabbatical)
  • ~2020: Photographed Aravind Srinivas, founder of Perplexity — the wake-up call
  • 2024: Crisis forced application (partner's illness)
  • 2025: Built immune system framework where information theory is primary, thermodynamics derivative — the ontologically flushed out testable hypotheses were a sight to behold

The Thesis

The Core Insight: Information Theory is Primary

The Core Insight From UCLA Thermodynamics: Information theory is primary. Thermodynamics is derivative.

Without ontological clarity:

  • Thermodynamics professors say "randomness" without explaining connection to information
  • Scientists can't collaborate across paradigms
  • AIs produce nonsense and mock data
  • Medicine fails patients with complex conditions
  • Innovation stalls in confusion
  • The smartest people in the field can't articulate what they actually believe
  • Even successful methods get forgotten and dismissed
  • Even NASDAQ-level success gets ignored if it challenges paradigms

With ontological clarity (Information Theory Primary):

  • Entropy makes sense through information theory
  • Models become mathematically sound
  • Cross-paradigm synthesis becomes possible
  • AIs become powerful tools rather than expensive mistakes
  • Real problems get solved at scale
  • Patients get proper diagnoses and treatment
  • Methods remain teachable and scalable
  • Can build companies that go public
  • Can save lives

Closing Reflection

From UCLA asking "What is entropy?" to discovering information theory might explain thermodynamics, to Cornell philosophy class, to TIMSS breakthrough, to co-founding a NASDAQ company, to biotech heartbreak, to 15-year photography sabbatical, to rural Oregon healthcare crisis, the lesson remains the same: You can't solve problems you can't clearly define. You can't build on foundations you haven't examined. And you definitely can't use AI effectively without ontological clarity.

That "waste of time" philosophy class? That uncomfortable moment asking "What is entropy?" Those sprints between North and South Campus at UCLA? Turned out to be the most practical things I ever learned.

The irony: That thermodynamics professor in the 1980s couldn't explain entropy beyond "randomness." Didn't connect it to information theory. Didn't have ontological clarity. I proved information theory works in 1996 — helping social scientists create breakthrough tools through absolute clarity of thinking. Proved it so well that we took a spinoff company to NASDAQ in 2000.

Then spent decades watching biomedical scientists (who have experimental control AND vastly more funding) fumble without it — just like that thermodynamics professor. Even with a NASDAQ IPO on my resume based on these exact principles, couldn't get the biotech establishment to take ontological clarity seriously.

Spent 15 years photographing Silicon Valley's elite while they built the AI revolution, asking them about Danger Theory, watching them fail to articulate their ontologies.

The person who finally woke me up? Aravind Srinivas, standing in front of my camera at San Francisco City Hall, telling me about a search engine built on understanding how information actually works. The founder of Perplexity, showing me that AI was already here — and those who understood information theory at a fundamental level were the ones building the future.

Now I'm using the same principles from UCLA thermodynamics epiphany, TIMSS, and Digital Lava — information theory as primary organizing principle, atomic units, set operations, explicit ontological frameworks — in ontologically clear AI models to do what the medical system couldn't: save the person I love.

The method works. It's always worked. Information theory explains thermodynamics. Information theory explains immune systems. Information theory went to NASDAQ. The question is: why does it keep getting dismissed?

Why couldn't that thermodynamics professor just say:

"Entropy is a measure of information disorder. The universe tends toward maximum entropy because it tends toward maximum information uncertainty. That's why your dorm gets messy — there are more high-entropy (disordered) states than low-entropy (ordered) states. That's the connection between information and energy."

That one moment of ontological clarity could have changed everything.